Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BU064_08890 | BU064_08895 | GCA_001902315_01626 | GCA_001902315_01627 | Unannotated protein. | Unannotated protein. | 0.854 |
BU064_08890 | BU064_08900 | GCA_001902315_01626 | GCA_001902315_01628 | Unannotated protein. | Unannotated protein. | 0.782 |
BU064_08890 | BU064_08905 | GCA_001902315_01626 | GCA_001902315_01629 | Unannotated protein. | Unannotated protein. | 0.782 |
BU064_08890 | BU064_08910 | GCA_001902315_01626 | GCA_001902315_01630 | Unannotated protein. | Unannotated protein. | 0.831 |
BU064_08890 | hpt | GCA_001902315_01626 | GCA_001902315_01624 | Unannotated protein. | Unannotated protein; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.773 |
BU064_08890 | mfd | GCA_001902315_01626 | GCA_001902315_01631 | Unannotated protein. | Unannotated protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.827 |
BU064_08890 | pth | GCA_001902315_01626 | GCA_001902315_01632 | Unannotated protein. | Unannotated protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.782 |
BU064_08890 | rpsH | GCA_001902315_01626 | GCA_001902315_02605 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.703 |
BU064_08890 | rpsI | GCA_001902315_01626 | GCA_001902315_02624 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS9 family. | 0.692 |
BU064_08890 | tilS | GCA_001902315_01626 | GCA_001902315_01625 | Unannotated protein. | Unannotated protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.777 |
BU064_08895 | BU064_08890 | GCA_001902315_01627 | GCA_001902315_01626 | Unannotated protein. | Unannotated protein. | 0.854 |
BU064_08895 | BU064_08900 | GCA_001902315_01627 | GCA_001902315_01628 | Unannotated protein. | Unannotated protein. | 0.861 |
BU064_08895 | BU064_08905 | GCA_001902315_01627 | GCA_001902315_01629 | Unannotated protein. | Unannotated protein. | 0.858 |
BU064_08895 | BU064_08910 | GCA_001902315_01627 | GCA_001902315_01630 | Unannotated protein. | Unannotated protein. | 0.926 |
BU064_08895 | hpt | GCA_001902315_01627 | GCA_001902315_01624 | Unannotated protein. | Unannotated protein; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.712 |
BU064_08895 | mfd | GCA_001902315_01627 | GCA_001902315_01631 | Unannotated protein. | Unannotated protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.860 |
BU064_08895 | pth | GCA_001902315_01627 | GCA_001902315_01632 | Unannotated protein. | Unannotated protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.862 |
BU064_08895 | tilS | GCA_001902315_01627 | GCA_001902315_01625 | Unannotated protein. | Unannotated protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.719 |
BU064_08900 | BU064_08890 | GCA_001902315_01628 | GCA_001902315_01626 | Unannotated protein. | Unannotated protein. | 0.782 |
BU064_08900 | BU064_08895 | GCA_001902315_01628 | GCA_001902315_01627 | Unannotated protein. | Unannotated protein. | 0.861 |
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