Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BU064_09875 | BU064_12520 | GCA_001902315_01650 | GCA_001902315_01658 | Unannotated protein. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.479 |
BU064_09875 | dnaX | GCA_001902315_01650 | GCA_001902315_01659 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.920 |
BU064_09875 | pcrA | GCA_001902315_01650 | GCA_001902315_00165 | Unannotated protein. | Unannotated protein. | 0.733 |
BU064_09875 | recO | GCA_001902315_01650 | GCA_001902315_00514 | Unannotated protein. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.521 |
BU064_09875 | recR | GCA_001902315_01650 | GCA_001902315_01657 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.600 |
BU064_12520 | BU064_09875 | GCA_001902315_01658 | GCA_001902315_01650 | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Unannotated protein. | 0.479 |
BU064_12520 | BU064_12530 | GCA_001902315_01658 | GCA_001902315_01660 | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Unannotated protein. | 0.753 |
BU064_12520 | dnaX | GCA_001902315_01658 | GCA_001902315_01659 | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.882 |
BU064_12520 | recR | GCA_001902315_01658 | GCA_001902315_01657 | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.987 |
BU064_12530 | BU064_12520 | GCA_001902315_01660 | GCA_001902315_01658 | Unannotated protein. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.753 |
BU064_12530 | dnaX | GCA_001902315_01660 | GCA_001902315_01659 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.817 |
BU064_12530 | recR | GCA_001902315_01660 | GCA_001902315_01657 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.753 |
GCA_001902315_00930 | recF | GCA_001902315_00930 | GCA_001902315_01939 | Unannotated protein. | Unannotated protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.437 |
GCA_001902315_00930 | recR | GCA_001902315_00930 | GCA_001902315_01657 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.617 |
dnaX | BU064_09875 | GCA_001902315_01659 | GCA_001902315_01650 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein. | 0.920 |
dnaX | BU064_12520 | GCA_001902315_01659 | GCA_001902315_01658 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.882 |
dnaX | BU064_12530 | GCA_001902315_01659 | GCA_001902315_01660 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein. | 0.817 |
dnaX | pcrA | GCA_001902315_01659 | GCA_001902315_00165 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein. | 0.780 |
dnaX | recO | GCA_001902315_01659 | GCA_001902315_00514 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein; Involved in DNA repair and RecF pathway recombination. | 0.465 |
dnaX | recR | GCA_001902315_01659 | GCA_001902315_01657 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.909 |
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