Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BU064_03305 | BU064_12275 | GCA_001902315_00522 | GCA_001902315_00078 | Unannotated protein. | Unannotated protein; Belongs to the DEAD box helicase family. | 0.524 |
BU064_03305 | BU064_13930 | GCA_001902315_00522 | GCA_001902315_01902 | Unannotated protein. | Unannotated protein. | 0.794 |
BU064_03305 | dnaK | GCA_001902315_00522 | GCA_001902315_00501 | Unannotated protein. | Unannotated protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.525 |
BU064_03305 | pnp | GCA_001902315_00522 | GCA_001902315_00905 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.946 |
BU064_03305 | rnr | GCA_001902315_00522 | GCA_001902315_01305 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.482 |
BU064_03305 | rplC | GCA_001902315_00522 | GCA_001902315_02591 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.842 |
BU064_03305 | rplT | GCA_001902315_00522 | GCA_001902315_00404 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.492 |
BU064_03305 | rpmA | GCA_001902315_00522 | GCA_001902315_00441 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.482 |
BU064_03305 | rpsL | GCA_001902315_00522 | GCA_001902315_01571 | Unannotated protein. | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.812 |
BU064_03305 | rpsQ | GCA_001902315_00522 | GCA_001902315_02600 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.853 |
BU064_12275 | BU064_03305 | GCA_001902315_00078 | GCA_001902315_00522 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein. | 0.524 |
BU064_12275 | BU064_13930 | GCA_001902315_00078 | GCA_001902315_01902 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein. | 0.794 |
BU064_12275 | dnaK | GCA_001902315_00078 | GCA_001902315_00501 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.530 |
BU064_12275 | pnp | GCA_001902315_00078 | GCA_001902315_00905 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.972 |
BU064_12275 | rnr | GCA_001902315_00078 | GCA_001902315_01305 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.475 |
BU064_12275 | rplC | GCA_001902315_00078 | GCA_001902315_02591 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.842 |
BU064_12275 | rplT | GCA_001902315_00078 | GCA_001902315_00404 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.492 |
BU064_12275 | rpmA | GCA_001902315_00078 | GCA_001902315_00441 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.482 |
BU064_12275 | rpsL | GCA_001902315_00078 | GCA_001902315_01571 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.812 |
BU064_12275 | rpsQ | GCA_001902315_00078 | GCA_001902315_02600 | Unannotated protein; Belongs to the DEAD box helicase family. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.853 |
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