STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLGALT2Collagen beta(1-O)galactosyltransferase 2. (234 aa)    
Predicted Functional Partners:
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.914
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.913
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.913
OGFOD2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
 0.613
ENSVKKP00000006424
annotation not available
 
      0.587
COL6A2
Collagen type VI alpha 2 chain.
   
 0.555
ENSVKKP00000016301
annotation not available
   
  0.545
ENSVKKP00000026435
annotation not available
    
  0.509
ENSVKKP00000000404
annotation not available
    
  0.504
ENSVKKP00000000426
annotation not available
    
  0.504
Your Current Organism:
Varanus komodoensis
NCBI taxonomy Id: 61221
Other names: Komodo dragon, Komodowaran, V. komodoensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.