STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSVKKP00000008564annotation not available (585 aa)    
Predicted Functional Partners:
LIG3
DNA ligase 3.
   
 0.999
POLB
DNA polymerase beta.
   
 0.987
LIG4
DNA ligase 4.
   
 0.974
XRCC6
X-ray repair cross complementing 6.
    
 0.972
ENSVKKP00000002650
annotation not available
   
 0.963
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.948
POLD1
DNA polymerase delta 1, catalytic subunit.
   
 0.934
LIG1
DNA ligase 1.
   
 0.932
ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit.
     
 0.930
APLF
Aprataxin and PNKP like factor.
    
 
 0.924
Your Current Organism:
Varanus komodoensis
NCBI taxonomy Id: 61221
Other names: Komodo dragon, Komodowaran, V. komodoensis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.