STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX3LIM homeobox 3. (366 aa)    
Predicted Functional Partners:
ISL1
ISL LIM homeobox 1.
   
0.894
ISL2
ISL LIM homeobox 2.
   
0.894
LDB2
LIM domain binding 2.
    
 0.773
LDB1
LIM domain binding 1.
    
 0.773
ENSVKKP00000003932
annotation not available
    
 
 0.644
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.644
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.644
ENSVKKP00000012688
annotation not available
    
 0.615
PRRX1
Paired related homeobox 1.
   
0.551
HESX1
HESX homeobox 1.
    
0.548
Your Current Organism:
Varanus komodoensis
NCBI taxonomy Id: 61221
Other names: Komodo dragon, Komodowaran, V. komodoensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.