STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FNTAFarnesyltransferase, CAAX box, alpha. (382 aa)    
Predicted Functional Partners:
PGGT1B
Protein geranylgeranyltransferase type I subunit beta.
    
 0.999
FNTB
Farnesyltransferase, CAAX box, beta.
    
 0.998
DHDDS
Dehydrodolichyl diphosphate synthase subunit.
     
 0.974
CHURC1
Churchill domain containing 1.
    
 0.964
GGPS1
Geranylgeranyl diphosphate synthase 1.
     
 0.950
ZMPSTE24
Zinc metallopeptidase STE24.
     
 0.948
RCE1
Ras converting CAAX endopeptidase 1.
     
 0.948
FDPS
Farnesyl diphosphate synthase.
     
 0.943
NUS1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.937
PDSS1
Decaprenyl diphosphate synthase subunit 1.
     
 0.931
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.