STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMCO6Transmembrane and coiled-coil domains 6. (499 aa)    
Predicted Functional Partners:
KPNB1
Karyopherin subunit beta 1.
   
 0.799
CSE1L
Chromosome segregation 1 like.
   
 0.725
NUP153
Nucleoporin 153.
   
 0.630
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.607
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.570
NUP50
Nucleoporin 50.
   
 
 0.564
ENSLCNP00005016672
annotation not available
    
   0.544
RRP8
Ribosomal RNA processing 8.
    
   0.544
EXOSC10
Exosome component 10.
    
   0.544
GCC2
GRIP and coiled-coil domain containing 2.
   
 0.510
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.