STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
   
 0.999
PRPF8
pre-mRNA processing factor 8.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.997
CDC5L
Cell division cycle 5 like.
   
  0.996
CDC40
Cell division cycle 40.
  
 
 
0.996
PRPF19
pre-mRNA processing factor 19.
  
0.996
DDX23
DEAD-box helicase 23.
    
 0.993
BCAS2
BCAS2 pre-mRNA processing factor.
   
 0.993
BUD31
BUD31 homolog.
   
 0.993
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.