STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP15Ubiquitin specific peptidase 15. (981 aa)    
Predicted Functional Partners:
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.960
SMAD7
SMAD family member 7.
    
 0.773
USP4
Ubiquitin specific peptidase 4.
  
 
 
0.752
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.751
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.741
UBC
Ubiquitin C.
    
 0.735
UBB
Ubiquitin B.
    
 0.735
ENSLCNP00005024235
annotation not available
    
 0.735
ITCH
Itchy E3 ubiquitin protein ligase.
   
 0.667
TRAF6
TNF receptor associated factor 6.
    
 0.654
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.