STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKZF1Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (761 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.910
SPATA5
Spermatogenesis associated 5.
   
 0.889
SPATA5L1
Spermatogenesis associated 5 like 1.
   
 0.889
EIF6
Eukaryotic translation initiation factor 6.
    
   0.769
FAAP100
FA core complex associated protein 100.
    
 0.754
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.754
TOMM70
Translocase of outer mitochondrial membrane 70.
     
 0.747
CATSPERG
Cation channel sperm associated auxiliary subunit gamma.
      
 0.747
MTX3
Metaxin 3.
     
 0.693
MGAT3
Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase.
     
 0.666
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.