STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD8PDZ domain containing 8. (1151 aa)    
Predicted Functional Partners:
ZFYVE27
Zinc finger FYVE-type containing 27.
      
 0.795
NSD3
Nuclear receptor binding SET domain protein 3.
      
 0.765
MON1A
MON1 homolog A, secretory trafficking associated.
      
 0.752
LNPK
Lunapark, ER junction formation factor.
    
 
 0.735
RAB7A
RAB7A, member RAS oncogene family.
    
 
 0.731
ACBD5
acyl-CoA binding domain containing 5.
      
 0.727
VAPA
VAMP associated protein A.
    
 
 0.722
STARD3
StAR related lipid transfer domain containing 3.
      
 0.689
CCZ1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.587
TEX2
Testis expressed 2.
   
  
 0.570
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.