STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBX1T-box transcription factor 1. (505 aa)    
Predicted Functional Partners:
CFAP54
Cilia and flagella associated protein 54.
   
  
 0.822
RCHY1
Ring finger and CHY zinc finger domain containing 1.
   
    0.816
GNB1L
G protein subunit beta 1 like.
      
 0.655
TMEM26
Transmembrane protein 26.
      
 0.577
TWF2
Twinfilin actin binding protein 2.
      
 0.524
SMPDL3B
Sphingomyelin phosphodiesterase acid like 3B.
      
 0.517
SLC2A9
Solute carrier family 2 member 9.
      
 0.514
HMX3
H6 family homeobox 3.
    
 
 0.497
PRDM16
PR/SET domain 16.
   
  
 0.486
MRPL40
Mitochondrial ribosomal protein L40.
      
 0.472
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.