STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CABP4Calcium binding protein 4. (274 aa)    
Predicted Functional Partners:
LRIT3
Leucine rich repeat, Ig-like and transmembrane domains 3.
   
 0.801
CACNA1F
Calcium voltage-gated channel subunit alpha1 F.
   
 0.796
GPR152
G protein-coupled receptor 152.
   
 0.781
PPP1R26
Protein phosphatase 1 regulatory subunit 26.
      
 0.760
CACNA2D4
Calcium voltage-gated channel auxiliary subunit alpha2delta 4.
     
 0.738
PTRH1
peptidyl-tRNA hydrolase 1 homolog.
      
 0.724
PITPNM1
Phosphatidylinositol transfer protein membrane associated 1.
    
 
 0.719
POMGNT1
Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).
      
 0.710
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.688
RPS6KB2
Ribosomal protein S6 kinase B2.
    
 0.625
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.