STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCNP00005023442annotation not available (68 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
   
 0.987
CHMP6
Charged multivesicular body protein 6.
    
 0.976
CHMP2A
Charged multivesicular body protein 2A.
    
 0.973
CHMP1A
Charged multivesicular body protein 1A.
   
 0.969
CHMP2B
Charged multivesicular body protein 2B.
   
 0.964
CHMP4C
Charged multivesicular body protein 4C.
    
 0.960
CHMP4B
Charged multivesicular body protein 4B.
    
 0.945
CHMP5
Charged multivesicular body protein 5.
   
 0.940
VPS4A
Vacuolar protein sorting 4 homolog A.
    
0.938
IST1
IST1 factor associated with ESCRT-III.
   
 0.936
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.