STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM23RNA binding motif protein 23. (446 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.877
RBM25
RNA binding motif protein 25.
   
0.875
CDC5L
Cell division cycle 5 like.
   
 
 0.849
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 
0.761
SON
SON DNA binding protein.
   
  0.756
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.724
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
  0.694
BANF1
Barrier to autointegration factor 1.
   
 0.684
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.666
DDX17
DEAD-box helicase 17.
   
 0.653
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.