STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYOD1Myogenic differentiation 1. (319 aa)    
Predicted Functional Partners:
TBP
TATA-box binding protein.
    
 0.928
TBPL2
TATA-box binding protein like 2.
    
 0.918
TBPL1
TATA-box binding protein like 1.
    
 0.911
MEF2D
Myocyte enhancer factor 2D.
    
 0.877
TCF12
Transcription factor 12.
    
 0.876
TCF3
Transcription factor 3.
    
 0.874
TCF4
Transcription factor 4.
    
 0.826
PAX7
Paired box 7.
   
 
 0.811
MYOG
Myogenin.
  
 
0.790
ID1
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.784
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.