STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC3H2Ring finger and CCCH-type domains 2. (1132 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.839
HELZ
Helicase with zinc finger.
   
 
 0.808
ATXN2L
Ataxin 2 like.
    
 
 0.808
MYSM1
Myb like, SWIRM and MPN domains 1.
   
   0.775
AFF4
AF4/FMR2 family member 4.
   
 
 0.766
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
  
 0.764
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 
 0.762
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
   
    0.754
XRN1
5'-3' exoribonuclease 1.
   
 
 0.754
PHIP
Pleckstrin homology domain interacting protein.
   
    0.744
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.