STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC3Zinc finger CCHC-type containing 3. (407 aa)    
Predicted Functional Partners:
TRIM38
Tripartite motif containing 38.
   
 
 0.751
GAREM1
GRB2 associated regulator of MAPK1 subtype 1.
    
 
 0.749
TRIM4
Tripartite motif containing 4.
   
 
 0.733
TRIM13
Tripartite motif containing 13.
   
 
 0.728
MTREX
Mtr4 exosome RNA helicase.
   
 0.693
USP3
Ubiquitin specific peptidase 3.
    
 
 0.677
RTL5
Retrotransposon Gag like 5.
   
 
 0.629
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.554
USP4
Ubiquitin specific peptidase 4.
    
 
 0.545
TENT4A
Terminal nucleotidyltransferase 4A.
   
 0.533
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.