STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPN4Opsin 4. (473 aa)    
Predicted Functional Partners:
TRIM9
Tripartite motif containing 9.
      
 0.650
GNAT2
G protein subunit alpha transducin 2.
    
 0.616
OPN1SW
Opsin 1, short wave sensitive.
   
 
0.590
GNG13
G protein subunit gamma 13.
   
 0.583
PLCB4
Phospholipase C beta 4.
     
 0.580
PLCB1
Phospholipase C beta 1.
     
 0.578
PLCB2
Phospholipase C beta 2.
     
 0.578
GNAT1
G protein subunit alpha transducin 1.
    
 0.570
GNA14
G protein subunit alpha 14.
    
 0.560
BTK
Bruton tyrosine kinase.
     
 0.560
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.