STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPIDRScaffold protein involved in DNA repair. (936 aa)    
Predicted Functional Partners:
SWSAP1
SWIM-type zinc finger 7 associated protein 1.
    
 
 0.782
FIGNL1
Fidgetin like 1.
    
 
 0.761
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.757
ENSLCNP00005002599
annotation not available
      
 0.724
AMOTL1
Angiomotin like 1.
      
 0.696
MAN2A1
Mannosidase alpha class 2A member 1.
      
 0.610
ZFYVE26
Zinc finger FYVE-type containing 26.
      
 0.607
WRN
WRN RecQ like helicase.
    
 0.600
TOP3A
DNA topoisomerase III alpha.
   
  0.588
BLM
BLM RecQ like helicase.
    
 0.580
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.