STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCNP00005034586annotation not available (468 aa)    
Predicted Functional Partners:
U2AF2
U2 small nuclear RNA auxiliary factor 2.
   
 0.972
SRSF2
Serine and arginine rich splicing factor 2.
   
 0.945
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
   
 0.911
ENSLCNP00005028641
annotation not available
   
 0.903
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.873
RNPC3
RNA binding region (RNP1, RRM) containing 3.
   
 0.864
SF3B1
Splicing factor 3b subunit 1.
   
 0.845
PDCD7
Programmed cell death 7.
    
  0.805
ZMAT5
Zinc finger matrin-type 5.
   
 0.803
U2AF1
U2 small nuclear RNA auxiliary factor 1.
   
 
0.800
Your Current Organism:
Lynx canadensis
NCBI taxonomy Id: 61383
Other names: Canada lynx, Felis canadensis, L. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.