STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VRR7Uncharacterized protein. (80 aa)    
Predicted Functional Partners:
A0A1Y1W9S0
Uncharacterized protein.
    
 0.959
A0A1Y1WCG6
VWFA domain-containing protein.
    
 0.838
A0A1Y1W4G7
Lactamase_B domain-containing protein.
    
 0.756
A0A1Y1WGV3
Metallo-hydrolase/oxidoreductase.
   
 0.746
A0A1Y1WMV4
Ssu72-like protein.
   
 
  0.690
A0A1Y1VZS7
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.679
A0A1Y1W248
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.676
A0A1Y1WH32
Uncharacterized protein.
     
 0.674
A0A1Y1WD11
Uncharacterized protein.
     
 0.667
A0A1Y1VYW9
MFS general substrate transporter.
    
  0.665
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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