STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VW51Peroxin/Ferlin domain-containing protein. (604 aa)    
Predicted Functional Partners:
A0A1Y1WD38
Spindle pole body component.
    
 0.733
A0A1Y1WLY6
Uncharacterized protein.
    
 0.733
A0A1Y1W3E0
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.726
A0A1Y1W1X6
Spindle pole body component.
    
 0.707
A0A1Y1WBL6
Carboxyltransferase subunit of acetyl-CoA carboxylase.
   
 0.684
A0A1Y1WDQ7
Carboxyl transferase.
   
 0.684
A0A1Y1W6I2
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.614
A0A1Y1WIH6
Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.
    
 0.599
A0A1Y1VTG6
Nucleoside diphosphate kinase; Belongs to the NDK family.
    
 0.562
A0A1Y1VPU8
WD40 repeat-like protein.
     
 0.560
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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