STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VWI7Uncharacterized protein. (317 aa)    
Predicted Functional Partners:
A0A1Y1VRN8
Uncharacterized protein.
   
 0.552
A0A1Y1W5I4
Uncharacterized protein.
   
 0.552
A0A1Y1WEB4
Uncharacterized protein.
    
 0.497
A0A1Y1W3M6
Uncharacterized protein; Belongs to the peptidase M16 family.
   
  0.457
A0A1Y1WGY0
Peptidase_M16 domain-containing protein.
   
  0.440
A0A1Y1WC20
Acyl-CoA dehydrogenase NM domain-like protein.
   
  0.437
A0A1Y1WDA6
26S proteasome subunit P45; Belongs to the AAA ATPase family.
   
  0.437
A0A1Y1WDL4
Acyl-CoA dehydrogenase NM domain-like protein.
   
  0.437
A0A1Y1W453
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.434
A0A1Y1WIA6
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
  0.434
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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