STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VYB3Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (187 aa)    
Predicted Functional Partners:
A0A1Y1W8P7
Putative PEP8-vacuolar protein sorting/targeting protein.
   
 0.999
A0A1Y1WDZ9
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.999
A0A1Y1W2A8
Vps5-domain-containing protein.
   
 
 0.975
A0A1Y1WKX6
Vps5 domain-containing protein.
    
 
 0.969
A0A1Y1VZA0
Sorting nexin-3.
   
 0.892
A0A1Y1VUB3
Rab-GAP TBC domain-containing protein.
    
 
 0.872
A0A1Y1WCI2
RabGAP/TBC.
    
 
 0.872
A0A1Y1W632
PX domain-containing protein.
    
 
 0.747
A0A1Y1WDV2
PX domain-containing protein.
    
 
 0.714
A0A1Y1VQK4
Uncharacterized protein.
   
 
 0.710
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.