STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VYG2mRNA capping enzyme alpha subunit. (368 aa)    
Predicted Functional Partners:
A0A1Y1WNB2
mRNA triphosphatase CET1.
    
 0.925
A0A1Y1W7E0
Uncharacterized protein.
    
 0.890
A0A1Y1VU53
Uncharacterized protein.
    
 0.849
A0A1Y1VYN0
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.849
A0A1Y1WL83
Uncharacterized protein.
    
 0.843
A0A1Y1WEG6
Guanine-7 methyltransferase, isoform CRA_d.
   
 0.803
A0A1Y1VRJ1
Insert subdomain of RNA polymerase alpha subunit.
   
 0.799
A0A1Y1WDI4
DNA-directed RNA polymerase II subunit.
    
  0.787
A0A1Y1W8N1
DNA directed RNA polymerase II polypeptide D-like protein.
    
  0.781
A0A1Y1W318
Uncharacterized protein.
    
 0.763
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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