STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1VZY5ARM repeat-containing protein. (458 aa)    
Predicted Functional Partners:
A0A1Y1W4G7
Lactamase_B domain-containing protein.
   
 0.999
A0A1Y1W9S0
Uncharacterized protein.
   
 0.999
A0A1Y1WGV3
Metallo-hydrolase/oxidoreductase.
   
 0.999
A0A1Y1WH32
Uncharacterized protein.
   
 0.997
A0A1Y1WJT0
Uncharacterized protein.
   
 0.997
A0A1Y1WCG6
VWFA domain-containing protein.
    
 0.995
A0A1Y1VZT7
mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1.
   
 0.908
A0A1Y1W7E0
Uncharacterized protein.
    
 0.895
A0A1Y1VZS7
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.891
A0A1Y1W2L7
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.872
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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