A0A1Y1W023 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1W023

Transcription initiation factor IIF, beta subunit. (246 aa)

Predicted Functional Partners:

A0A1Y1W2H2

0.999

A0A1Y1VZS7

0.995

A0A1Y1W8N9

0.995

A0A1Y1VRJ1

0.994

A0A1Y1W151

0.992

A0A1Y1WDI4

0.992

A0A1Y1W8A1

0.990

A0A1Y1WCL5

0.987

A0A1Y1W8N1

0.986

A0A1Y1WP52

0.986

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1VRJ1	A0A1Y1VZS7	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1Y1VRJ1	A0A1Y1W023	Insert subdomain of RNA polymerase alpha subunit.	Transcription initiation factor IIF, beta subunit.	0.994
A0A1Y1VRJ1	A0A1Y1W151	Insert subdomain of RNA polymerase alpha subunit.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.969
A0A1Y1VRJ1	A0A1Y1W2H2	Insert subdomain of RNA polymerase alpha subunit.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.993
A0A1Y1VRJ1	A0A1Y1W8A1	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1Y1VRJ1	A0A1Y1W8N1	Insert subdomain of RNA polymerase alpha subunit.	DNA directed RNA polymerase II polypeptide D-like protein.	0.999
A0A1Y1VRJ1	A0A1Y1W8N9	Insert subdomain of RNA polymerase alpha subunit.	RPB5 subunit of DNA-directed RNA polymerase.	0.999
A0A1Y1VRJ1	A0A1Y1WCL5	Insert subdomain of RNA polymerase alpha subunit.	HTH TFE/IIEalpha-type domain-containing protein.	0.969
A0A1Y1VRJ1	A0A1Y1WDI4	Insert subdomain of RNA polymerase alpha subunit.	DNA-directed RNA polymerase II subunit.	0.999
A0A1Y1VRJ1	A0A1Y1WP52	Insert subdomain of RNA polymerase alpha subunit.	TBP-domain-containing protein.	0.975
A0A1Y1VZS7	A0A1Y1VRJ1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Insert subdomain of RNA polymerase alpha subunit.	0.999
A0A1Y1VZS7	A0A1Y1W023	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF, beta subunit.	0.995
A0A1Y1VZS7	A0A1Y1W151	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.973
A0A1Y1VZS7	A0A1Y1W2H2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.995
A0A1Y1VZS7	A0A1Y1W8A1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1Y1VZS7	A0A1Y1W8N1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA directed RNA polymerase II polypeptide D-like protein.	0.999
A0A1Y1VZS7	A0A1Y1W8N9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPB5 subunit of DNA-directed RNA polymerase.	0.999
A0A1Y1VZS7	A0A1Y1WCL5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH TFE/IIEalpha-type domain-containing protein.	0.978
A0A1Y1VZS7	A0A1Y1WDI4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit.	0.999
A0A1Y1VZS7	A0A1Y1WP52	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TBP-domain-containing protein.	0.974