A0A1Y1W0F4 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1W0F4

WD40 repeat-like protein. (311 aa)

Predicted Functional Partners:

A0A1Y1VZN9

0.999

A0A1Y1W2W8

0.999

A0A1Y1W615

0.999

A0A1Y1W9T9

0.999

A0A1Y1VYT4

0.950

A0A1Y1WCB9

0.941

A0A1Y1VRU8

0.832

A0A1Y1VUQ9

0.832

A0A1Y1VZ55

0.832

A0A1Y1W8T8

0.832

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1VRU8	A0A1Y1VYT4	RNA-binding domain-containing protein.	G-patch_2 domain-containing protein.	0.821
A0A1Y1VRU8	A0A1Y1VZN9	RNA-binding domain-containing protein.	Uncharacterized protein.	0.840
A0A1Y1VRU8	A0A1Y1W0F4	RNA-binding domain-containing protein.	WD40 repeat-like protein.	0.832
A0A1Y1VRU8	A0A1Y1W2W8	RNA-binding domain-containing protein.	Uncharacterized protein.	0.827
A0A1Y1VRU8	A0A1Y1W615	RNA-binding domain-containing protein.	Uncharacterized protein.	0.903
A0A1Y1VRU8	A0A1Y1W9T9	RNA-binding domain-containing protein.	Uncharacterized protein.	0.844
A0A1Y1VRU8	A0A1Y1WCB9	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.933
A0A1Y1VUQ9	A0A1Y1VYT4	RNA-binding domain-containing protein.	G-patch_2 domain-containing protein.	0.821
A0A1Y1VUQ9	A0A1Y1VZN9	RNA-binding domain-containing protein.	Uncharacterized protein.	0.840
A0A1Y1VUQ9	A0A1Y1W0F4	RNA-binding domain-containing protein.	WD40 repeat-like protein.	0.832
A0A1Y1VUQ9	A0A1Y1W2W8	RNA-binding domain-containing protein.	Uncharacterized protein.	0.827
A0A1Y1VUQ9	A0A1Y1W615	RNA-binding domain-containing protein.	Uncharacterized protein.	0.903
A0A1Y1VUQ9	A0A1Y1W9T9	RNA-binding domain-containing protein.	Uncharacterized protein.	0.844
A0A1Y1VUQ9	A0A1Y1WCB9	RNA-binding domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.933
A0A1Y1VYT4	A0A1Y1VRU8	G-patch_2 domain-containing protein.	RNA-binding domain-containing protein.	0.821
A0A1Y1VYT4	A0A1Y1VUQ9	G-patch_2 domain-containing protein.	RNA-binding domain-containing protein.	0.821
A0A1Y1VYT4	A0A1Y1VZ55	G-patch_2 domain-containing protein.	RNA-binding domain-containing protein.	0.821
A0A1Y1VYT4	A0A1Y1VZN9	G-patch_2 domain-containing protein.	Uncharacterized protein.	0.947
A0A1Y1VYT4	A0A1Y1W0F4	G-patch_2 domain-containing protein.	WD40 repeat-like protein.	0.950
A0A1Y1VYT4	A0A1Y1W2W8	G-patch_2 domain-containing protein.	Uncharacterized protein.	0.916