STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1W6V7Uncharacterized protein. (99 aa)    
Predicted Functional Partners:
A0A1Y1W6G5
Ribosomal protein L15.
   
   0.864
A0A1Y1W2D7
Ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.841
A0A1Y1WCX9
Translation protein; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.821
A0A1Y1W784
Uncharacterized protein.
   
 
 0.799
A0A1Y1WK59
L51_S25_CI-B8 domain-containing protein.
   
 
 0.787
A0A1Y1VZ74
Uncharacterized protein.
   
 
 0.786
A0A1Y1WJL4
30S ribosomal protein S12p; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.786
A0A1Y1W521
Uncharacterized protein.
   
 
 0.779
A0A1Y1WNL7
Translational machinery component.
   
 
 0.776
A0A1Y1W7J8
Uncharacterized protein.
   
 
 0.734
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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