STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WD66Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)    
Predicted Functional Partners:
A0A1Y1WBJ4
Ubiquitin-activating emzyme E1; Belongs to the ubiquitin-activating E1 family.
    
 0.955
A0A1Y1WH51
ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.
    
 
 0.949
A0A1Y1VXX3
DUF1077-domain-containing protein.
    
   0.942
A0A1Y1W0V0
RING-type domain-containing protein.
    
 
 0.908
A0A1Y1WH12
NOT2_3_5 domain-containing protein.
    
 
 0.905
A0A1Y1W1P7
UBC-like protein.
    
0.881
A0A1Y1W2H1
UBC-like protein.
    
0.881
A0A1Y1WDY8
RING-type domain-containing protein.
    
 
 0.875
A0A1Y1W4B3
Ubiquitin.
    
 0.872
A0A1Y1W4X8
E2_bind domain-containing protein.
    
 0.830
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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