A0A1Y1WDF3 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1WDF3

Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (146 aa)

Predicted Functional Partners:

A0A1Y1W6K7

0.973

A0A1Y1W958

0.944

A0A1Y1WAS6

0.917

A0A1Y1WE22

0.917

A0A1Y1WJZ5

0.917

A0A1Y1VYM2

0.895

A0A1Y1VT73

0.860

A0A1Y1W7F0

0.860

A0A1Y1WCQ2

0.837

A0A1Y1W4X8

0.830

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1VT73	A0A1Y1VYM2	Ubiquitin-like domain-containing protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.876
A0A1Y1VT73	A0A1Y1W4X8	Ubiquitin-like domain-containing protein.	E2_bind domain-containing protein.	0.950
A0A1Y1VT73	A0A1Y1W6K7	Ubiquitin-like domain-containing protein.	Putative ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.936
A0A1Y1VT73	A0A1Y1W958	Ubiquitin-like domain-containing protein.	Putative RING-box protein 1A.	0.955
A0A1Y1VT73	A0A1Y1WAS6	Ubiquitin-like domain-containing protein.	Cullin-1; Belongs to the cullin family.	0.871
A0A1Y1VT73	A0A1Y1WCQ2	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.947
A0A1Y1VT73	A0A1Y1WDF3	Ubiquitin-like domain-containing protein.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.860
A0A1Y1VT73	A0A1Y1WE22	Ubiquitin-like domain-containing protein.	Cullin-domain-containing protein; Belongs to the cullin family.	0.871
A0A1Y1VT73	A0A1Y1WJZ5	Ubiquitin-like domain-containing protein.	Cullin-3; Belongs to the cullin family.	0.868
A0A1Y1VYM2	A0A1Y1VT73	Cullin-domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.876
A0A1Y1VYM2	A0A1Y1W4X8	Cullin-domain-containing protein; Belongs to the cullin family.	E2_bind domain-containing protein.	0.778
A0A1Y1VYM2	A0A1Y1W6K7	Cullin-domain-containing protein; Belongs to the cullin family.	Putative ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.837
A0A1Y1VYM2	A0A1Y1W7F0	Cullin-domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.876
A0A1Y1VYM2	A0A1Y1W958	Cullin-domain-containing protein; Belongs to the cullin family.	Putative RING-box protein 1A.	0.975
A0A1Y1VYM2	A0A1Y1WAS6	Cullin-domain-containing protein; Belongs to the cullin family.	Cullin-1; Belongs to the cullin family.	0.728
A0A1Y1VYM2	A0A1Y1WCQ2	Cullin-domain-containing protein; Belongs to the cullin family.	MPN domain-containing protein.	0.956
A0A1Y1VYM2	A0A1Y1WDF3	Cullin-domain-containing protein; Belongs to the cullin family.	Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.	0.895
A0A1Y1VYM2	A0A1Y1WE22	Cullin-domain-containing protein; Belongs to the cullin family.	Cullin-domain-containing protein; Belongs to the cullin family.	0.728
A0A1Y1VYM2	A0A1Y1WJZ5	Cullin-domain-containing protein; Belongs to the cullin family.	Cullin-3; Belongs to the cullin family.	0.755
A0A1Y1W4X8	A0A1Y1VT73	E2_bind domain-containing protein.	Ubiquitin-like domain-containing protein.	0.950