STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WE54Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
A0A1Y1WCA9
Nuclear cap-binding protein subunit 2.
    
 0.756
A0A1Y1W9M0
ARM repeat-containing protein.
    
 0.755
A0A1Y1WIS9
RNA-binding domain-containing protein.
   
 0.752
A0A1Y1WFW7
Endo/exonuclease/phosphatase domain-containing protein.
    
 
 0.690
A0A1Y1WNL5
DNA-directed RNA polymerase I, II, and III subunit RPABC5.
   
  0.664
A0A1Y1W7T7
Uncharacterized protein.
   
 0.659
A0A1Y1WIN9
RNA-binding domain-containing protein.
   
 0.652
A0A1Y1VXX2
RRM domain RNA-binding protein.
   
 0.651
A0A1Y1WIS5
Glycine-rich RNA-binding protein.
   
 0.651
A0A1Y1W8N1
DNA directed RNA polymerase II polypeptide D-like protein.
    
  0.649
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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