STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WEG0Uncharacterized protein. (2257 aa)    
Predicted Functional Partners:
A0A1Y1WK23
BP28CT-domain-containing protein.
   
 0.998
A0A1Y1W209
YVTN repeat-like/Quino protein amine dehydrogenase.
   
 0.997
A0A1Y1W7G1
Nop14-like protein.
   
 0.997
A0A1Y1W8B5
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.996
A0A1Y1WKG9
WD40 repeat-like protein.
   
 0.996
A0A1Y1WMI1
U3 small nucleolar RNA-associated protein 22.
   
 0.996
A0A1Y1VZW3
YVTN repeat-like/Quino protein amine dehydrogenase.
   
 
 0.995
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.995
A0A1Y1WDE4
DUF663-domain-containing protein.
   
 
 0.995
A0A1Y1WGH3
BING4CT-domain-containing protein.
   
 0.995
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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