STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WER1Uncharacterized protein. (384 aa)    
Predicted Functional Partners:
A0A1Y1WD58
SANT_DAMP1_like domain-containing protein.
   
 0.877
A0A1Y1W023
Transcription initiation factor IIF, beta subunit.
   
 0.863
A0A1Y1W2H2
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.860
A0A1Y1VRJ1
Insert subdomain of RNA polymerase alpha subunit.
   
 0.843
A0A1Y1W873
RBP11-like subunits of RNA polymerase.
   
 0.831
A0A1Y1VYS9
Enhancer of polycomb-like protein.
    
 0.828
A0A1Y1W5C7
CT20-domain-containing protein.
    
 0.824
A0A1Y1W928
Uncharacterized protein.
    
 0.823
A0A1Y1W938
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.822
A0A1Y1W5K8
NuA4-domain-containing protein.
    
 0.814
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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