A0A1Y1WF71 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1WF71

Uncharacterized protein. (380 aa)

Predicted Functional Partners:

A0A1Y1W1T1

0.943

A0A1Y1W733

0.900

A0A1Y1WBZ4

0.886

A0A1Y1VXK2

0.852

A0A1Y1W548

0.731

A0A1Y1W987

0.704

A0A1Y1W3C3

0.664

A0A1Y1WDL1

0.651

NOP7

0.634

A0A1Y1WB62

0.627

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Y1VXK2	A0A1Y1W1T1	A0A1Y1VXK2	A0A1Y1W1T1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	PAXNEB-domain-containing protein.	0.987
A0A1Y1VXK2	A0A1Y1W3C3	A0A1Y1VXK2	A0A1Y1W3C3	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Chromatin associated protein KTI12.	0.884
A0A1Y1VXK2	A0A1Y1W733	A0A1Y1VXK2	A0A1Y1W733	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.995
A0A1Y1VXK2	A0A1Y1WB62	A0A1Y1VXK2	A0A1Y1WB62	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	P-loop containing nucleoside triphosphate hydrolase protein.	0.501
A0A1Y1VXK2	A0A1Y1WBZ4	A0A1Y1VXK2	A0A1Y1WBZ4	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.691
A0A1Y1VXK2	A0A1Y1WDL1	A0A1Y1VXK2	A0A1Y1WDL1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	WD40 repeat-like protein.	0.973
A0A1Y1VXK2	A0A1Y1WF71	A0A1Y1VXK2	A0A1Y1WF71	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.852
A0A1Y1W1T1	A0A1Y1VXK2	A0A1Y1W1T1	A0A1Y1VXK2	PAXNEB-domain-containing protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.987
A0A1Y1W1T1	A0A1Y1W3C3	A0A1Y1W1T1	A0A1Y1W3C3	PAXNEB-domain-containing protein.	Chromatin associated protein KTI12.	0.649
A0A1Y1W1T1	A0A1Y1W733	A0A1Y1W1T1	A0A1Y1W733	PAXNEB-domain-containing protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.993
A0A1Y1W1T1	A0A1Y1WBZ4	A0A1Y1W1T1	A0A1Y1WBZ4	PAXNEB-domain-containing protein.	Uncharacterized protein.	0.950
A0A1Y1W1T1	A0A1Y1WDL1	A0A1Y1W1T1	A0A1Y1WDL1	PAXNEB-domain-containing protein.	WD40 repeat-like protein.	0.885
A0A1Y1W1T1	A0A1Y1WF71	A0A1Y1W1T1	A0A1Y1WF71	PAXNEB-domain-containing protein.	Uncharacterized protein.	0.943
A0A1Y1W3C3	A0A1Y1VXK2	A0A1Y1W3C3	A0A1Y1VXK2	Chromatin associated protein KTI12.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.884
A0A1Y1W3C3	A0A1Y1W1T1	A0A1Y1W3C3	A0A1Y1W1T1	Chromatin associated protein KTI12.	PAXNEB-domain-containing protein.	0.649
A0A1Y1W3C3	A0A1Y1W733	A0A1Y1W3C3	A0A1Y1W733	Chromatin associated protein KTI12.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.802
A0A1Y1W3C3	A0A1Y1WF71	A0A1Y1W3C3	A0A1Y1WF71	Chromatin associated protein KTI12.	Uncharacterized protein.	0.664
A0A1Y1W548	A0A1Y1W987	A0A1Y1W548	A0A1Y1W987	WD_REPEATS_REGION domain-containing protein.	Ipi1_N domain-containing protein.	0.999
A0A1Y1W548	A0A1Y1WB62	A0A1Y1W548	A0A1Y1WB62	WD_REPEATS_REGION domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.972
A0A1Y1W548	A0A1Y1WDL1	A0A1Y1W548	A0A1Y1WDL1	WD_REPEATS_REGION domain-containing protein.	WD40 repeat-like protein.	0.422