STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WH45Putative chromosome segregation protein SudA. (1137 aa)    
Predicted Functional Partners:
A0A1Y1WIH2
Uncharacterized protein.
   
 0.999
A0A1Y1WIK3
RecF/RecN/SMC protein.
  
0.999
A0A1Y1WMX6
SCD domain-containing protein.
   
 0.999
A0A1Y1W2M7
Sister chromatid cohesion protein.
   
 0.997
A0A1Y1WA18
DNA/RNA polymerase.
  
 0.997
A0A1Y1WEW1
Uncharacterized protein.
   
 0.987
A0A1Y1WC77
Uncharacterized protein.
   
 0.979
A0A1Y1W2V0
Uncharacterized protein.
   
 0.975
A0A1Y1WJA3
Serine/threonine-protein kinase.
   
 0.949
A0A1Y1WGL3
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.939
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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