STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WI86Uncharacterized protein. (286 aa)    
Predicted Functional Partners:
A0A1Y1WEI6
Uncharacterized protein.
    
 0.807
A0A1Y1W4W1
Uncharacterized protein.
    
 0.796
A0A1Y1WHA5
DNA polymerase.
   
 0.793
A0A1Y1W0H7
ERCC4-domain-containing protein.
    
 0.787
A0A1Y1W985
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.765
A0A1Y1WM27
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.763
A0A1Y1W964
Small nuclear ribonucleo protein F.
    
  0.749
A0A1Y1WCV7
Small nuclear ribonucleoprotein Sm D2.
    
 0.747
A0A1Y1WLH4
Small nuclear ribonucleoprotein G.
    
  0.736
A0A1Y1W125
WD40 repeat-like protein.
    
 0.706
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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