A0A1Y1WK35 protein (Linderina pennispora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1WK35

P-loop containing nucleoside triphosphate hydrolase protein. (313 aa)

Predicted Functional Partners:

A0A1Y1WKQ6

0.929

A0A1Y1VXQ3

0.922

A0A1Y1W0Y9

0.909

A0A1Y1WFN3

0.897

A0A1Y1W541

0.884

A0A1Y1W951

0.883

A0A1Y1WCX9

0.879

A0A1Y1W186

0.877

A0A1Y1W6G5

0.876

DL89DRAFT_2884

0.873

Your Current Organism:

Linderina pennispora

NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Y1VXQ3	A0A1Y1W0Y9	A0A1Y1VXQ3	A0A1Y1W0Y9	G domain-containing protein.	SpoU_methylase domain-containing protein.	0.815
A0A1Y1VXQ3	A0A1Y1W186	A0A1Y1VXQ3	A0A1Y1W186	G domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.922
A0A1Y1VXQ3	A0A1Y1W541	A0A1Y1VXQ3	A0A1Y1W541	G domain-containing protein.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.929
A0A1Y1VXQ3	A0A1Y1W6G5	A0A1Y1VXQ3	A0A1Y1W6G5	G domain-containing protein.	Ribosomal protein L15.	0.902
A0A1Y1VXQ3	A0A1Y1W951	A0A1Y1VXQ3	A0A1Y1W951	G domain-containing protein.	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.929
A0A1Y1VXQ3	A0A1Y1WCX9	A0A1Y1VXQ3	A0A1Y1WCX9	G domain-containing protein.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.940
A0A1Y1VXQ3	A0A1Y1WFN3	A0A1Y1VXQ3	A0A1Y1WFN3	G domain-containing protein.	DUF143-domain-containing protein.	0.967
A0A1Y1VXQ3	A0A1Y1WK35	A0A1Y1VXQ3	A0A1Y1WK35	G domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.922
A0A1Y1VXQ3	A0A1Y1WKQ6	A0A1Y1VXQ3	A0A1Y1WKQ6	G domain-containing protein.	tRNA modification GTPase GTPBP3, mitochondrial-like protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.897
A0A1Y1VXQ3	DL89DRAFT_2884	A0A1Y1VXQ3	A0A1Y1WKV1	G domain-containing protein.	Ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.929
A0A1Y1W0Y9	A0A1Y1VXQ3	A0A1Y1W0Y9	A0A1Y1VXQ3	SpoU_methylase domain-containing protein.	G domain-containing protein.	0.815
A0A1Y1W0Y9	A0A1Y1W186	A0A1Y1W0Y9	A0A1Y1W186	SpoU_methylase domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.906
A0A1Y1W0Y9	A0A1Y1W541	A0A1Y1W0Y9	A0A1Y1W541	SpoU_methylase domain-containing protein.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.915
A0A1Y1W0Y9	A0A1Y1W6G5	A0A1Y1W0Y9	A0A1Y1W6G5	SpoU_methylase domain-containing protein.	Ribosomal protein L15.	0.747
A0A1Y1W0Y9	A0A1Y1W951	A0A1Y1W0Y9	A0A1Y1W951	SpoU_methylase domain-containing protein.	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.832
A0A1Y1W0Y9	A0A1Y1WCX9	A0A1Y1W0Y9	A0A1Y1WCX9	SpoU_methylase domain-containing protein.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.824
A0A1Y1W0Y9	A0A1Y1WFN3	A0A1Y1W0Y9	A0A1Y1WFN3	SpoU_methylase domain-containing protein.	DUF143-domain-containing protein.	0.942
A0A1Y1W0Y9	A0A1Y1WK35	A0A1Y1W0Y9	A0A1Y1WK35	SpoU_methylase domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.909
A0A1Y1W0Y9	A0A1Y1WKQ6	A0A1Y1W0Y9	A0A1Y1WKQ6	SpoU_methylase domain-containing protein.	tRNA modification GTPase GTPBP3, mitochondrial-like protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.920
A0A1Y1W0Y9	DL89DRAFT_2884	A0A1Y1W0Y9	A0A1Y1WKV1	SpoU_methylase domain-containing protein.	Ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.532