STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WKS7ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (578 aa)    
Predicted Functional Partners:
A0A1Y1W9Y4
Arginase; Belongs to the arginase family.
    
 0.813
A0A1Y1WLG2
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.762
A0A1Y1W221
NADPH:adrenodoxin oxidoreductase, mitochondrial.
   
 
  0.739
A0A1Y1WFR8
Glutathione-disulfide reductase.
   
 0.736
A0A1Y1WJ60
Dihydrolipoyl dehydrogenase.
   
 0.732
A0A1Y1WJ77
Argininosuccinate synthase.
    
 0.719
A0A1Y1WES9
Glutamate synthase.
   
 
  0.709
A0A1Y1VZR1
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.700
A0A1Y1WGW2
Argininosuccinate lyase.
     
 0.698
A0A1Y1WKZ3
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.698
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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