STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WM79Uncharacterized protein. (1069 aa)    
Predicted Functional Partners:
A0A1Y1W4S8
Uncharacterized protein.
    
 0.790
A0A1Y1WCR2
Transcription factor Tfb4.
    
 0.784
A0A1Y1WA88
DNA/RNA polymerase.
    
 0.783
A0A1Y1WDF1
Component of the holoenzyme form of RNA polymerase transcription factor.
   
 0.781
A0A1Y1W938
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.775
A0A1Y1WL88
Actin/actin-like protein; Belongs to the actin family.
   
 0.774
A0A1Y1W451
Actin-like ATPase domain-containing protein; Belongs to the actin family.
    
 0.771
A0A1Y1VZC9
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.767
A0A1Y1W5N4
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.763
A0A1Y1WDH9
Transcription factor TFIIH complex subunit Rad15.
    
 0.763
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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