STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y1WMZ2Homogentisate 1,2-dioxygenase. (409 aa)    
Predicted Functional Partners:
A0A1Y1W9B1
4-hydroxyphenylpyruvate dioxygenase.
  
 0.938
A0A1Y1WG64
Fumarylacetoacetase.
 
 
 0.778
A0A1Y1W3S3
Maleylacetoacetate isomerase; Belongs to the GST superfamily.
  
 
 0.759
A0A1Y1WJK3
FAA_hydrolase domain-containing protein.
  
 
 0.744
A0A1Y1W5F7
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
     
 0.651
A0A1Y1W7H0
Tetrameric phenylalanine hydroxylase.
  
  
 0.608
A0A1Y1W7P9
Tyrosine 3-monooxygenase.
  
  
 0.608
A0A1Y1W216
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.600
A0A1Y1VYZ6
Glutathione S-transferase; Belongs to the GST superfamily.
  
 
 0.596
A0A1Y1W342
S-adenosyl-L-methionine-dependent methyltransferase.
  
 
 0.596
Your Current Organism:
Linderina pennispora
NCBI taxonomy Id: 61395
Other names: ATCC 12442, CBS 312.51, L. pennispora, NRRL 2237
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