Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKE09625.1Involved in resistance to the phages N4 and lambda; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)    
Predicted Functional Partners:
AKE12167.1
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.977
adrA
Diguanylate cyclase; Catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.881
AKE09341.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.838
AKE10382.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.830
AKE12192.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.825
AKE11690.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.817
AKE09874.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.811
AKE11144.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.810
AKE10878.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.804
csrD
Regulatory protein CsrD; Regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
Your Current Organism:
Serratia liquefaciens
NCBI taxonomy Id: 614
Other names: ATCC 27592, Aerobacter liquefaciens, CCUG 9285, CIP 103238, DSM 4487, LMG 7884, LMG:7884, NCTC 12962, S. liquefaciens
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