AKE09804.1 protein (Serratia liquefaciens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKE09804.1

Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)

Predicted Functional Partners:

AKE09771.1

0.722

AKE09998.1

0.722

AKE10003.1

0.722

AKE10040.1

0.722

AKE10152.1

0.722

AKE10532.1

0.722

AKE12275.1

0.722

AKE10473.1

0.717

AKE11468.1

0.717

AKE12610.1

0.717

Your Current Organism:

Serratia liquefaciens

NCBI taxonomy Id: 614
Other names: ATCC 27592, Aerobacter liquefaciens, CCUG 9285, CIP 103238, DSM 4487, LMG 7884, LMG:7884, NCTC 12962, S. liquefaciens

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKE09771.1	AKE09804.1	XJ20_07780	XJ20_07960	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09771.1	AKE09998.1	XJ20_07780	XJ20_09000	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AKE09771.1	AKE10003.1	XJ20_07780	XJ20_09025	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AKE09771.1	AKE10040.1	XJ20_07780	XJ20_09215	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AKE09771.1	AKE12275.1	XJ20_07780	XJ20_21150	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AKE09804.1	AKE09771.1	XJ20_07960	XJ20_07780	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE09998.1	XJ20_07960	XJ20_09000	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE10003.1	XJ20_07960	XJ20_09025	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE10040.1	XJ20_07960	XJ20_09215	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE10152.1	XJ20_07960	XJ20_09800	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE10473.1	XJ20_07960	XJ20_11485	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AKE09804.1	AKE10532.1	XJ20_07960	XJ20_11810	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE11468.1	XJ20_07960	XJ20_16795	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AKE09804.1	AKE12275.1	XJ20_07960	XJ20_21150	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09804.1	AKE12610.1	XJ20_07960	XJ20_23050	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
AKE09998.1	AKE09771.1	XJ20_09000	XJ20_07780	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AKE09998.1	AKE09804.1	XJ20_09000	XJ20_07960	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AKE09998.1	AKE10003.1	XJ20_09000	XJ20_09025	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AKE09998.1	AKE10040.1	XJ20_09000	XJ20_09215	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AKE09998.1	AKE10532.1	XJ20_09000	XJ20_11810	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454

page 1 of 3

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About