BB559_002062 protein (Furculomyces boomerangus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BB559_002062

Uncharacterized protein. (567 aa)

Predicted Functional Partners:

NOP7

0.969

ERB1

0.951

BB559_003967

0.950

YTM1

0.947

BB559_000264

0.926

BB559_006308

0.923

BB559_006990

0.912

BB559_000623

0.908

BB559_007293

0.906

BB559_001931

0.905

Your Current Organism:

Furculomyces boomerangus

NCBI taxonomy Id: 61424
Other names: F. boomerangus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BB559_000264	BB559_000623	A0A2T9Z5V8	A0A2T9Z4Q9	PUA domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.710
BB559_000264	BB559_001931	A0A2T9Z5V8	A0A2T9YZN5	PUA domain-containing protein.	Brix domain-containing protein.	0.909
BB559_000264	BB559_002062	A0A2T9Z5V8	A0A2T9YYD4	PUA domain-containing protein.	Uncharacterized protein.	0.926
BB559_000264	BB559_003967	A0A2T9Z5V8	A0A2T9YHK3	PUA domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.777
BB559_000264	BB559_006308	A0A2T9Z5V8	A0A2T9Y3K0	PUA domain-containing protein.	Uncharacterized protein.	0.878
BB559_000264	BB559_006990	A0A2T9Z5V8	A0A2T9XZG6	PUA domain-containing protein.	Uncharacterized protein.	0.704
BB559_000264	BB559_007293	A0A2T9Z5V8	A0A2T9XXZ4	PUA domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.880
BB559_000264	ERB1	A0A2T9Z5V8	A0A2T9YRZ4	PUA domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.943
BB559_000264	NOP7	A0A2T9Z5V8	A0A2T9Y0M7	PUA domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.947
BB559_000264	YTM1	A0A2T9Z5V8	A0A2T9YLI4	PUA domain-containing protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.915
BB559_000623	BB559_000264	A0A2T9Z4Q9	A0A2T9Z5V8	Uncharacterized protein; Belongs to the DEAD box helicase family.	PUA domain-containing protein.	0.710
BB559_000623	BB559_001931	A0A2T9Z4Q9	A0A2T9YZN5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.824
BB559_000623	BB559_002062	A0A2T9Z4Q9	A0A2T9YYD4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.908
BB559_000623	BB559_003967	A0A2T9Z4Q9	A0A2T9YHK3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.739
BB559_000623	BB559_006308	A0A2T9Z4Q9	A0A2T9Y3K0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.807
BB559_000623	BB559_006990	A0A2T9Z4Q9	A0A2T9XZG6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.849
BB559_000623	BB559_007293	A0A2T9Z4Q9	A0A2T9XXZ4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.671
BB559_000623	ERB1	A0A2T9Z4Q9	A0A2T9YRZ4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.865
BB559_000623	NOP7	A0A2T9Z4Q9	A0A2T9Y0M7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.861
BB559_000623	YTM1	A0A2T9Z4Q9	A0A2T9YLI4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.794