BB559_000222 protein (Furculomyces boomerangus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BB559_000222

5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (509 aa)

Predicted Functional Partners:

BB559_001030

0.882

BB559_007071

0.850

BB559_003083

0.850

BB559_003519

0.841

BB559_003752

0.835

BB559_000764

0.835

BB559_000430

0.763

BB559_004230

0.743

BB559_001272

0.741

BB559_002525

0.724

Your Current Organism:

Furculomyces boomerangus

NCBI taxonomy Id: 61424
Other names: F. boomerangus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BB559_000222	BB559_000430	A0A2T9Z5Z9	A0A2T9Z582	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.763
BB559_000222	BB559_000764	A0A2T9Z5Z9	A0A2T9Z427	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.835
BB559_000222	BB559_001030	A0A2T9Z5Z9	A0A2T9Z3B1	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.882
BB559_000222	BB559_001272	A0A2T9Z5Z9	A0A2T9Z2I9	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	RmlD_sub_bind domain-containing protein.	0.741
BB559_000222	BB559_002525	A0A2T9Z5Z9	A0A2T9YUI8	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.724
BB559_000222	BB559_003083	A0A2T9Z5Z9	A0A2T9YPA3	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Tryptophan synthase.	0.850
BB559_000222	BB559_003519	A0A2T9Z5Z9	A0A2T9YKU0	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.841
BB559_000222	BB559_003752	A0A2T9Z5Z9	A0A2T9YJ40	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.835
BB559_000222	BB559_004230	A0A2T9Z5Z9	A0A2T9YFY9	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_5 domain-containing protein.	0.743
BB559_000222	BB559_007071	A0A2T9Z5Z9	A0A2T9XZ01	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Tryptophan synthase.	0.850
BB559_000430	BB559_000222	A0A2T9Z582	A0A2T9Z5Z9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.763
BB559_000430	BB559_002525	A0A2T9Z582	A0A2T9YUI8	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Aminotran_1_2 domain-containing protein.	0.777
BB559_000430	BB559_003083	A0A2T9Z582	A0A2T9YPA3	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Tryptophan synthase.	0.589
BB559_000430	BB559_004230	A0A2T9Z582	A0A2T9YFY9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Aminotran_5 domain-containing protein.	0.831
BB559_000430	BB559_007071	A0A2T9Z582	A0A2T9XZ01	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Tryptophan synthase.	0.589
BB559_000764	BB559_000222	A0A2T9Z427	A0A2T9Z5Z9	Uncharacterized protein.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.835
BB559_000764	BB559_002525	A0A2T9Z427	A0A2T9YUI8	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.835
BB559_000764	BB559_003752	A0A2T9Z427	A0A2T9YJ40	Uncharacterized protein.	Uncharacterized protein.	0.812
BB559_001030	BB559_000222	A0A2T9Z3B1	A0A2T9Z5Z9	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.882
BB559_001030	BB559_002525	A0A2T9Z3B1	A0A2T9YUI8	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.828