Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDX32355.1 | SDX32411.1 | SAMN05421644_10189 | SAMN05421644_10191 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | Putative sigma-54 modulation protein. | 0.827 |
| SDX32355.1 | SDX32443.1 | SAMN05421644_10189 | SAMN05421644_10192 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.605 |
| SDX32355.1 | SDX32468.1 | SAMN05421644_10189 | SAMN05421644_10193 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | Lipopolysaccharide export system ATP-binding protein. | 0.451 |
| SDX32355.1 | SDX32524.1 | SAMN05421644_10189 | SAMN05421644_10195 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | Lipopolysaccharide export system protein LptC. | 0.423 |
| SDX32355.1 | SDX32555.1 | SAMN05421644_10189 | SAMN05421644_10196 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.432 |
| SDX32355.1 | lptA | SAMN05421644_10189 | SAMN05421644_10194 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.511 |
| SDX32411.1 | SDX32355.1 | SAMN05421644_10191 | SAMN05421644_10189 | Putative sigma-54 modulation protein. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.827 |
| SDX32411.1 | SDX32443.1 | SAMN05421644_10191 | SAMN05421644_10192 | Putative sigma-54 modulation protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.854 |
| SDX32411.1 | SDX32468.1 | SAMN05421644_10191 | SAMN05421644_10193 | Putative sigma-54 modulation protein. | Lipopolysaccharide export system ATP-binding protein. | 0.652 |
| SDX32411.1 | SDX32524.1 | SAMN05421644_10191 | SAMN05421644_10195 | Putative sigma-54 modulation protein. | Lipopolysaccharide export system protein LptC. | 0.572 |
| SDX32411.1 | SDX32555.1 | SAMN05421644_10191 | SAMN05421644_10196 | Putative sigma-54 modulation protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.591 |
| SDX32411.1 | lptA | SAMN05421644_10191 | SAMN05421644_10194 | Putative sigma-54 modulation protein. | Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.600 |
| SDX32443.1 | SDX32355.1 | SAMN05421644_10192 | SAMN05421644_10189 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.605 |
| SDX32443.1 | SDX32411.1 | SAMN05421644_10192 | SAMN05421644_10191 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Putative sigma-54 modulation protein. | 0.854 |
| SDX32443.1 | SDX32468.1 | SAMN05421644_10192 | SAMN05421644_10193 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide export system ATP-binding protein. | 0.673 |
| SDX32443.1 | SDX32524.1 | SAMN05421644_10192 | SAMN05421644_10195 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide export system protein LptC. | 0.685 |
| SDX32443.1 | SDX32555.1 | SAMN05421644_10192 | SAMN05421644_10196 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.646 |
| SDX32443.1 | lptA | SAMN05421644_10192 | SAMN05421644_10194 | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.694 |
| SDX32468.1 | SDX32355.1 | SAMN05421644_10193 | SAMN05421644_10189 | Lipopolysaccharide export system ATP-binding protein. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.451 |
| SDX32468.1 | SDX32411.1 | SAMN05421644_10193 | SAMN05421644_10191 | Lipopolysaccharide export system ATP-binding protein. | Putative sigma-54 modulation protein. | 0.652 |
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