Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDX54171.1 | SDX54208.1 | SAMN05421644_10634 | SAMN05421644_10635 | Methyl-accepting chemotaxis protein. | Murein L,D-transpeptidase YcbB/YkuD. | 0.470 |
| SDX54208.1 | SDX54171.1 | SAMN05421644_10635 | SAMN05421644_10634 | Murein L,D-transpeptidase YcbB/YkuD. | Methyl-accepting chemotaxis protein. | 0.470 |
| SDX54208.1 | SDX76687.1 | SAMN05421644_10635 | SAMN05421644_11260 | Murein L,D-transpeptidase YcbB/YkuD. | L,D-transpeptidase ErfK/SrfK. | 0.550 |
| SDX54208.1 | SDX86057.1 | SAMN05421644_10635 | SAMN05421644_11642 | Murein L,D-transpeptidase YcbB/YkuD. | Cell wall hydrolase CwlJ, involved in spore germination. | 0.404 |
| SDX54208.1 | SDX99171.1 | SAMN05421644_10635 | SAMN05421644_12319 | Murein L,D-transpeptidase YcbB/YkuD. | L,D-transpeptidase catalytic domain. | 0.611 |
| SDX54208.1 | SDY14906.1 | SAMN05421644_10635 | SAMN05421644_13324 | Murein L,D-transpeptidase YcbB/YkuD. | Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.600 |
| SDX54208.1 | SDY32368.1 | SAMN05421644_10635 | SAMN05421644_14914 | Murein L,D-transpeptidase YcbB/YkuD. | Uncharacterized conserved protein YcbK, DUF882 family. | 0.788 |
| SDX54208.1 | rlpA-2 | SAMN05421644_10635 | SAMN05421644_10636 | Murein L,D-transpeptidase YcbB/YkuD. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.438 |
| SDX76687.1 | SDX54208.1 | SAMN05421644_11260 | SAMN05421644_10635 | L,D-transpeptidase ErfK/SrfK. | Murein L,D-transpeptidase YcbB/YkuD. | 0.550 |
| SDX76687.1 | SDX99171.1 | SAMN05421644_11260 | SAMN05421644_12319 | L,D-transpeptidase ErfK/SrfK. | L,D-transpeptidase catalytic domain. | 0.693 |
| SDX86057.1 | SDX54208.1 | SAMN05421644_11642 | SAMN05421644_10635 | Cell wall hydrolase CwlJ, involved in spore germination. | Murein L,D-transpeptidase YcbB/YkuD. | 0.404 |
| SDX99171.1 | SDX54208.1 | SAMN05421644_12319 | SAMN05421644_10635 | L,D-transpeptidase catalytic domain. | Murein L,D-transpeptidase YcbB/YkuD. | 0.611 |
| SDX99171.1 | SDX76687.1 | SAMN05421644_12319 | SAMN05421644_11260 | L,D-transpeptidase catalytic domain. | L,D-transpeptidase ErfK/SrfK. | 0.693 |
| SDX99171.1 | SDY14906.1 | SAMN05421644_12319 | SAMN05421644_13324 | L,D-transpeptidase catalytic domain. | Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | 0.600 |
| SDX99171.1 | SDY32368.1 | SAMN05421644_12319 | SAMN05421644_14914 | L,D-transpeptidase catalytic domain. | Uncharacterized conserved protein YcbK, DUF882 family. | 0.416 |
| SDY14906.1 | SDX54208.1 | SAMN05421644_13324 | SAMN05421644_10635 | Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Murein L,D-transpeptidase YcbB/YkuD. | 0.600 |
| SDY14906.1 | SDX99171.1 | SAMN05421644_13324 | SAMN05421644_12319 | Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | L,D-transpeptidase catalytic domain. | 0.600 |
| SDY14906.1 | SDY32368.1 | SAMN05421644_13324 | SAMN05421644_14914 | Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. | Uncharacterized conserved protein YcbK, DUF882 family. | 0.758 |
| SDY32368.1 | SDX54208.1 | SAMN05421644_14914 | SAMN05421644_10635 | Uncharacterized conserved protein YcbK, DUF882 family. | Murein L,D-transpeptidase YcbB/YkuD. | 0.788 |
| SDY32368.1 | SDX99171.1 | SAMN05421644_14914 | SAMN05421644_12319 | Uncharacterized conserved protein YcbK, DUF882 family. | L,D-transpeptidase catalytic domain. | 0.416 |
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