STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX66672.1Type IV pilus assembly protein PilO. (196 aa)    
Predicted Functional Partners:
SDX66641.1
Type IV pilus assembly protein PilN.
 
 
 0.998
SDX66704.1
Type IV pilus assembly protein PilP.
 
 
 0.998
SDX66735.1
Type IV pilus assembly protein PilQ.
 
 
 0.994
SDX66606.1
Type IV pilus assembly protein PilM.
 
 
 0.992
SDX99388.1
LysM domain-containing protein.
  
 
   0.950
SDX57817.1
Type IV pilus assembly protein PilC.
 
 
 
 0.908
SDX57781.1
Type IV pilus assembly protein PilB.
 
 
 0.888
SDX64797.1
Type IV fimbrial biogenesis protein FimT.
 
   
 0.801
SDX92441.1
Type IV pilus assembly protein PilZ.
  
   
 0.787
SDX64826.1
Type IV pilus assembly protein PilV.
 
   
 0.769
Your Current Organism:
Allochromatium warmingii
NCBI taxonomy Id: 61595
Other names: A. warmingii, ATCC 14959, Chromatium cuculliferum, Chromatium warmingii, DSM 173, Monas cucullifera, Monas warmingii, strain 6512
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.